leapR - Layered enrichment analysis of pathways R
leapR is a package that identifies pathways that are enriched across diverse 'omics experiments. It leverages any tabular expression data (proteomics, transcriptomics) using the `SummarizedExperiment` object. It works with any pathway in the .gct file format.
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genesetenrichmentproteomicspathwaysgeneexpressiontranscriptomicssoftware
8.07 score 19 stars 91 scripts 228 downloadsspammR - SPatial Analysis of Multiomics Measurements in R
SpammR provides a suite of tools and a data structure to analyze diverse multiomics measurements in a spatial context. It enables the analysis and visualization of omics measurements paired with a specific image, each with spatial coordinates.
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spatialpathwaysproteomicsdifferentialexpressionmetabolomicssystemsbiologygeneexpressiongenesetenrichmentsoftwaretranscriptionsequencingmicroarrayepigeneticscheminformaticstranscriptomicscoveragenormalizationpreprocessingbayesianclusteringregressionexonarrayrnaseqonechanneltwochannelmicrornaarraymrnamicroarrayproprietaryplatformssinglecellcellbiologybiomedicalinformaticsfunctionalgenomicsimmunooncologyalternativesplicingdifferentialsplicingbatcheffectmultiplecomparisonqualitycontroltimecoursedataimportlipidomics
5.79 score 8 stars